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Job:
Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq
data integration
single-cell
pacbio
across species
Job
6.1 years ago
bgee
• 0
5
votes
15
replies
5.0k
views
Cross-species RNA-seq with DESeq2
deseq2
rnaseq
across species
updated 10 months ago by
James W. MacDonald
65k • written 6.8 years ago by
vtartaglio
▴ 10
1
vote
12
replies
3.3k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim
Gene ontology
semantic similarity
across species
updated 7.4 years ago by
Guangchuang Yu
★ 1.2k • written 7.4 years ago by
saadmurtazakhan
▴ 10
0
votes
7
replies
2.4k
views
Error reading kallisto files using tximport for cross species RNA-Seq analysis
kallisto
tximport
RNA-Seq
across species
updated 2.5 years ago by
nicolette.sipperly
• 0 • written 6.9 years ago by
urjaswita
▴ 40
0
votes
1
reply
737
views
DESeq2 modeling different organisms as batch effects
deseq2
batch effect
across species
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
mjldehoon
• 0
2
votes
1
reply
1.1k
views
Cross-species analysis and normalization with DESeq2
normalization
deseq2
across species
rnaseq
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
rmurray2050
• 0
6 results • Page
1 of 1
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Replies
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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